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Description of Statistical Computation

Author's title

Author*The author of this computation has been verified*
R Software Modulerwasp_chi_squared_tests.wasp
Title produced by softwareChi-Squared Test, McNemar Test, and Fisher Exact Test
Date of computationMon, 19 Dec 2016 12:26:08 +0100
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2016/Dec/19/t1482146855rjh5urjshzn15j1.htm/, Retrieved Fri, 01 Nov 2024 03:36:44 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=301301, Retrieved Fri, 01 Nov 2024 03:36:44 +0000
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact115

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-       [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [chi-squared test ...] [2016-12-19 11:26:08] [037c0315c9d4524e6acd33ab3022e7a2] [Current]
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Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
2	3
4	5
4	5
4	5
3	4
4	5
1	5
4	5
3	5
4	5
2	5
4	3
4	5
5	5
4	4
1	3
2	5
4	3
4	5
5	5
5	4
4	2
1	5
4	5
2	5
4	4
5	4
3	4
5	5
3	5
5	4
2	5
1	5
3	1
4	5
4	4
3	4
5	4
4	5
3	4
4	4
2	5
3	3
1	5
3	5
3	2
3	3
4	4
4	4
4	3
4	5
4	5
2	4
5	5
3	5
3	4
4	5
4	4
4	4
3	3
4	4
4	4
4	5
4	4
4	4
2	4
4	4
4	4
4	2
4	4
4	4
5	5
3	3
2	3
4	5
5	4
4	5
5	4
5	4
2	5
4	5
4	5
4	4
3	5
4	5
2	2
5	5
3	5
4	5
2	5
4	4
3	4
3	5
4	4
4	5
4	5
3	5
4	4
3	5
3	5
1	3
4	5
3	5
3	5
5	4
5	4
4	4
5	4
4	5
4	5
4	4
4	3
3	3
4	4
3	4
4	5
2	5
1	4
5	5
4	5
3	4
4	4
4	5
4	5
4	5
2	5
4	4
4	5
4	3
4	5
3	5
4	4
5	5
2	4
5	4
4	4
3	4
3	2
2	4
2	5
2	5
4	5
4	4
5	4
3	5
3	5
4	5
4	5
4	5
4	5
4	4
4	5
4	3
2	3
5	4
4	4
4	3
4	3
4	5
4	5
2	5
3	5
3	5
4	5
4	5
4	5
4	4
3	4
3	2

Tables (Output of Computation)





Summary of computational transaction
Raw Input view raw input (R code)
Raw Outputview raw output of R engine
Computing time1 seconds
R ServerBig Analytics Cloud Computing Center

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input view raw input (R code)  \tabularnewline
Raw Outputview raw output of R engine  \tabularnewline
Computing time1 seconds \tabularnewline
R ServerBig Analytics Cloud Computing Center \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=301301&T=0

[TABLE]
[ROW]
Summary of computational transaction[/C][/ROW] [ROW]Raw Input[/C] view raw input (R code) [/C][/ROW] [ROW]Raw Output[/C]view raw output of R engine [/C][/ROW] [ROW]Computing time[/C]1 seconds[/C][/ROW] [ROW]R Server[/C]Big Analytics Cloud Computing Center[/C][/ROW] [/TABLE] Source: https://freestatistics.org/blog/index.php?pk=301301&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=301301&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input view raw input (R code)
Raw Outputview raw output of R engine
Computing time1 seconds
R ServerBig Analytics Cloud Computing Center






Tabulation of Results
IVHB3 x ITH1
12345
100214
2013412
31351017
40283144
5000138

\begin{tabular}{lllllllll}
\hline
Tabulation of Results \tabularnewline
IVHB3  x  ITH1 \tabularnewline
  & 1 & 2 & 3 & 4 & 5 \tabularnewline
1 & 0 & 0 & 2 & 1 & 4 \tabularnewline
2 & 0 & 1 & 3 & 4 & 12 \tabularnewline
3 & 1 & 3 & 5 & 10 & 17 \tabularnewline
4 & 0 & 2 & 8 & 31 & 44 \tabularnewline
5 & 0 & 0 & 0 & 13 & 8 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=301301&T=1

[TABLE]
[ROW][C]Tabulation of Results[/C][/ROW]
[ROW][C]IVHB3  x  ITH1[/C][/ROW]
[ROW][C] [/C][C]1[/C][C]2[/C][C]3[/C][C]4[/C][C]5[/C][/ROW]
[C]1[/C][C]0[/C][C]0[/C][C]2[/C][C]1[/C][C]4[/C][/ROW]
[C]2[/C][C]0[/C][C]1[/C][C]3[/C][C]4[/C][C]12[/C][/ROW]
[C]3[/C][C]1[/C][C]3[/C][C]5[/C][C]10[/C][C]17[/C][/ROW]
[C]4[/C][C]0[/C][C]2[/C][C]8[/C][C]31[/C][C]44[/C][/ROW]
[C]5[/C][C]0[/C][C]0[/C][C]0[/C][C]13[/C][C]8[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=301301&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=301301&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Tabulation of Results
IVHB3 x ITH1
12345
100214
2013412
31351017
40283144
5000138






Tabulation of Expected Results
IVHB3 x ITH1
12345
10.040.250.752.443.52
20.120.712.136.9810.06
30.211.283.8312.5718.11
40.53.029.0529.6742.75
50.120.752.247.3310.56

\begin{tabular}{lllllllll}
\hline
Tabulation of Expected Results \tabularnewline
IVHB3  x  ITH1 \tabularnewline
  & 1 & 2 & 3 & 4 & 5 \tabularnewline
1 & 0.04 & 0.25 & 0.75 & 2.44 & 3.52 \tabularnewline
2 & 0.12 & 0.71 & 2.13 & 6.98 & 10.06 \tabularnewline
3 & 0.21 & 1.28 & 3.83 & 12.57 & 18.11 \tabularnewline
4 & 0.5 & 3.02 & 9.05 & 29.67 & 42.75 \tabularnewline
5 & 0.12 & 0.75 & 2.24 & 7.33 & 10.56 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=301301&T=2

[TABLE]
[ROW][C]Tabulation of Expected Results[/C][/ROW]
[ROW][C]IVHB3  x  ITH1[/C][/ROW]
[ROW][C] [/C][C]1[/C][C]2[/C][C]3[/C][C]4[/C][C]5[/C][/ROW]
[C]1[/C][C]0.04[/C][C]0.25[/C][C]0.75[/C][C]2.44[/C][C]3.52[/C][/ROW]
[C]2[/C][C]0.12[/C][C]0.71[/C][C]2.13[/C][C]6.98[/C][C]10.06[/C][/ROW]
[C]3[/C][C]0.21[/C][C]1.28[/C][C]3.83[/C][C]12.57[/C][C]18.11[/C][/ROW]
[C]4[/C][C]0.5[/C][C]3.02[/C][C]9.05[/C][C]29.67[/C][C]42.75[/C][/ROW]
[C]5[/C][C]0.12[/C][C]0.75[/C][C]2.24[/C][C]7.33[/C][C]10.56[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=301301&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=301301&T=2

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Tabulation of Expected Results
IVHB3 x ITH1
12345
10.040.250.752.443.52
20.120.712.136.9810.06
30.211.283.8312.5718.11
40.53.029.0529.6742.75
50.120.752.247.3310.56






Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic20.91
P value0.18

\begin{tabular}{lllllllll}
\hline
Statistical Results \tabularnewline
Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates) \tabularnewline
Exact Pearson Chi Square Statistic & 20.91 \tabularnewline
P value & 0.18 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=301301&T=3

[TABLE]
[ROW][C]Statistical Results[/C][/ROW]
[ROW][C]Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates)[/C][/ROW]
[ROW][C]Exact Pearson Chi Square Statistic[/C][C]20.91[/C][/ROW]
[ROW][C]P value[/C][C]0.18[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=301301&T=3

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=301301&T=3

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic20.91
P value0.18


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = 1 ; par2 = 2 ; par3 = Exact Pearson Chi-Squared by Simulation ;
Parameters (R input):
par1 = 1 ; par2 = 2 ; par3 = Exact Pearson Chi-Squared by Simulation ;
R code (references can be found in the software module):
library(vcd)
cat1 <- as.numeric(par1) #
cat2<- as.numeric(par2) #
simulate.p.value=FALSE
if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE
x <- t(x)
(z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,]))))
(table1 <- table(z[,cat1],z[,cat2]))
(V1<-dimnames(y)[[1]][cat1])
(V2<-dimnames(y)[[1]][cat2])
bitmap(file='pic1.png')
assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T)
dev.off()
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, table1[nr, nc], 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable.tab')
(cst<-chisq.test(table1, simulate.p.value=simulate.p.value) )
if (par3 == 'McNemar Chi-Squared') {
(cst <- mcnemar.test(table1))
}
if (par3=='Fisher Exact Test') {
(cst <- fisher.test(table1))
}
if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) {
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
}
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Statistical Results',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, cst$method, 2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE)
if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE)
if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE)
if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE)
if (par3=='Fisher Exact Test') {
if ((ncol(table1) == 2) & (nrow(table1) == 2)) {
a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE)
} else {
a<-table.element(a, '--', 1,FALSE)
}
} else {
a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE)
}
a<-table.row.end(a)
if(!simulate.p.value){
if(par3!='Fisher Exact Test') {
a<-table.row.start(a)
a<-table.element(a, 'Degrees of Freedom', 1, TRUE)
a<-table.element(a, cst$parameter, 1,FALSE)
a<-table.row.end(a)
}
}
a<-table.row.start(a)
a<-table.element(a, 'P value', 1, TRUE)
a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable2.tab')