Repository of Reproducible Computations

Free Statistics

of Irreproducible Research!

Author's title

Author

*The author of this computation has been verified*

R Software Module

rwasp_chi_squared_tests.wasp

Title produced by software

Chi-Squared Test, McNemar Test, and Fisher Exact Test

Date of computation

Sat, 17 Dec 2016 19:15:15 +0100

Cite this page as follows

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2016/Dec/17/t14819998858ugob6dhapknbz0.htm/, Retrieved Fri, 01 Nov 2024 03:48:13 +0000

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=300906, Retrieved Fri, 01 Nov 2024 03:48:13 +0000

QR Codes:

Paste this QR Code to cite your computation.

Original text written by user:

IsPrivate?

No (this computation is public)

User-defined keywords

Estimated Impact

106

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)

-       [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [Chi squared simul...] [2016-12-17 18:15:15] [870ee93fd745ab9642a13cc9296726e0] [Current]

Feedback Forum

Post a new message

Dataseries X:

Download CSV

Histogram

Boxplots

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	1 seconds
R Server	Big Analytics Cloud Computing Center

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input view raw input (R code)  \tabularnewline
Raw Outputview raw output of R engine  \tabularnewline
Computing time1 seconds \tabularnewline
R ServerBig Analytics Cloud Computing Center \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=300906&T=0

[TABLE]
[ROW]

Summary of computational transaction[/C][/ROW] [ROW]

Raw Input[/C]

view raw input (R code) [/C][/ROW] [ROW]

Raw Output[/C]

view raw output of R engine [/C][/ROW] [ROW]

Computing time[/C]

1 seconds[/C][/ROW] [ROW]

R Server[/C]

Big Analytics Cloud Computing Center[/C][/ROW] [/TABLE] Source: https://freestatistics.org/blog/index.php?pk=300906&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=300906&T=0

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	1 seconds
R Server	Big Analytics Cloud Computing Center

Tabulation of Results
IKSUM x TVDCSUM
	10	11	12	13	14	15	16	17	18	19	20
13	0	0	0	0	0	0	0	1	1	0	0
14	0	1	1	2	0	0	1	1	0	0	0
15	0	0	1	0	1	2	1	1	0	0	0
16	1	0	0	2	2	4	3	6	2	0	1
17	0	1	0	2	4	4	6	1	0	1	0
18	0	0	0	1	2	2	6	4	2	1	0
19	0	1	1	1	4	2	6	4	1	0	0
20	0	0	0	0	0	2	4	2	2	0	0

\begin{tabular}{lllllllll}
\hline
Tabulation of Results \tabularnewline
IKSUM  x  TVDCSUM \tabularnewline
  & 10 & 11 & 12 & 13 & 14 & 15 & 16 & 17 & 18 & 19 & 20 \tabularnewline
13 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 1 & 1 & 0 & 0 \tabularnewline
14 & 0 & 1 & 1 & 2 & 0 & 0 & 1 & 1 & 0 & 0 & 0 \tabularnewline
15 & 0 & 0 & 1 & 0 & 1 & 2 & 1 & 1 & 0 & 0 & 0 \tabularnewline
16 & 1 & 0 & 0 & 2 & 2 & 4 & 3 & 6 & 2 & 0 & 1 \tabularnewline
17 & 0 & 1 & 0 & 2 & 4 & 4 & 6 & 1 & 0 & 1 & 0 \tabularnewline
18 & 0 & 0 & 0 & 1 & 2 & 2 & 6 & 4 & 2 & 1 & 0 \tabularnewline
19 & 0 & 1 & 1 & 1 & 4 & 2 & 6 & 4 & 1 & 0 & 0 \tabularnewline
20 & 0 & 0 & 0 & 0 & 0 & 2 & 4 & 2 & 2 & 0 & 0 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=300906&T=1

[TABLE]
[ROW][C]Tabulation of Results[/C][/ROW]
[ROW][C]IKSUM  x  TVDCSUM[/C][/ROW]
[ROW][C] [/C][C]10[/C][C]11[/C][C]12[/C][C]13[/C][C]14[/C][C]15[/C][C]16[/C][C]17[/C][C]18[/C][C]19[/C][C]20[/C][/ROW]
[C]13[/C][C]0[/C][C]0[/C][C]0[/C][C]0[/C][C]0[/C][C]0[/C][C]0[/C][C]1[/C][C]1[/C][C]0[/C][C]0[/C][/ROW]
[C]14[/C][C]0[/C][C]1[/C][C]1[/C][C]2[/C][C]0[/C][C]0[/C][C]1[/C][C]1[/C][C]0[/C][C]0[/C][C]0[/C][/ROW]
[C]15[/C][C]0[/C][C]0[/C][C]1[/C][C]0[/C][C]1[/C][C]2[/C][C]1[/C][C]1[/C][C]0[/C][C]0[/C][C]0[/C][/ROW]
[C]16[/C][C]1[/C][C]0[/C][C]0[/C][C]2[/C][C]2[/C][C]4[/C][C]3[/C][C]6[/C][C]2[/C][C]0[/C][C]1[/C][/ROW]
[C]17[/C][C]0[/C][C]1[/C][C]0[/C][C]2[/C][C]4[/C][C]4[/C][C]6[/C][C]1[/C][C]0[/C][C]1[/C][C]0[/C][/ROW]
[C]18[/C][C]0[/C][C]0[/C][C]0[/C][C]1[/C][C]2[/C][C]2[/C][C]6[/C][C]4[/C][C]2[/C][C]1[/C][C]0[/C][/ROW]
[C]19[/C][C]0[/C][C]1[/C][C]1[/C][C]1[/C][C]4[/C][C]2[/C][C]6[/C][C]4[/C][C]1[/C][C]0[/C][C]0[/C][/ROW]
[C]20[/C][C]0[/C][C]0[/C][C]0[/C][C]0[/C][C]0[/C][C]2[/C][C]4[/C][C]2[/C][C]2[/C][C]0[/C][C]0[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=300906&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=300906&T=1

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Tabulation of Results
IKSUM x TVDCSUM
	10	11	12	13	14	15	16	17	18	19	20
13	0	0	0	0	0	0	0	1	1	0	0
14	0	1	1	2	0	0	1	1	0	0	0
15	0	0	1	0	1	2	1	1	0	0	0
16	1	0	0	2	2	4	3	6	2	0	1
17	0	1	0	2	4	4	6	1	0	1	0
18	0	0	0	1	2	2	6	4	2	1	0
19	0	1	1	1	4	2	6	4	1	0	0
20	0	0	0	0	0	2	4	2	2	0	0

Tabulation of Expected Results
IKSUM x TVDCSUM
	10	11	12	13	14	15	16	17	18	19	20
13	0.02	0.06	0.06	0.16	0.25	0.31	0.53	0.39	0.16	0.04	0.02
14	0.06	0.18	0.18	0.47	0.76	0.94	1.59	1.18	0.47	0.12	0.06
15	0.06	0.18	0.18	0.47	0.76	0.94	1.59	1.18	0.47	0.12	0.06
16	0.21	0.62	0.62	1.65	2.68	3.29	5.56	4.12	1.65	0.41	0.21
17	0.19	0.56	0.56	1.49	2.42	2.98	5.03	3.73	1.49	0.37	0.19
18	0.18	0.53	0.53	1.41	2.29	2.82	4.76	3.53	1.41	0.35	0.18
19	0.2	0.59	0.59	1.57	2.55	3.14	5.29	3.92	1.57	0.39	0.2
20	0.1	0.29	0.29	0.78	1.27	1.57	2.65	1.96	0.78	0.2	0.1

\begin{tabular}{lllllllll}
\hline
Tabulation of Expected Results \tabularnewline
IKSUM  x  TVDCSUM \tabularnewline
  & 10 & 11 & 12 & 13 & 14 & 15 & 16 & 17 & 18 & 19 & 20 \tabularnewline
13 & 0.02 & 0.06 & 0.06 & 0.16 & 0.25 & 0.31 & 0.53 & 0.39 & 0.16 & 0.04 & 0.02 \tabularnewline
14 & 0.06 & 0.18 & 0.18 & 0.47 & 0.76 & 0.94 & 1.59 & 1.18 & 0.47 & 0.12 & 0.06 \tabularnewline
15 & 0.06 & 0.18 & 0.18 & 0.47 & 0.76 & 0.94 & 1.59 & 1.18 & 0.47 & 0.12 & 0.06 \tabularnewline
16 & 0.21 & 0.62 & 0.62 & 1.65 & 2.68 & 3.29 & 5.56 & 4.12 & 1.65 & 0.41 & 0.21 \tabularnewline
17 & 0.19 & 0.56 & 0.56 & 1.49 & 2.42 & 2.98 & 5.03 & 3.73 & 1.49 & 0.37 & 0.19 \tabularnewline
18 & 0.18 & 0.53 & 0.53 & 1.41 & 2.29 & 2.82 & 4.76 & 3.53 & 1.41 & 0.35 & 0.18 \tabularnewline
19 & 0.2 & 0.59 & 0.59 & 1.57 & 2.55 & 3.14 & 5.29 & 3.92 & 1.57 & 0.39 & 0.2 \tabularnewline
20 & 0.1 & 0.29 & 0.29 & 0.78 & 1.27 & 1.57 & 2.65 & 1.96 & 0.78 & 0.2 & 0.1 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=300906&T=2

[TABLE]
[ROW][C]Tabulation of Expected Results[/C][/ROW]
[ROW][C]IKSUM  x  TVDCSUM[/C][/ROW]
[ROW][C] [/C][C]10[/C][C]11[/C][C]12[/C][C]13[/C][C]14[/C][C]15[/C][C]16[/C][C]17[/C][C]18[/C][C]19[/C][C]20[/C][/ROW]
[C]13[/C][C]0.02[/C][C]0.06[/C][C]0.06[/C][C]0.16[/C][C]0.25[/C][C]0.31[/C][C]0.53[/C][C]0.39[/C][C]0.16[/C][C]0.04[/C][C]0.02[/C][/ROW]
[C]14[/C][C]0.06[/C][C]0.18[/C][C]0.18[/C][C]0.47[/C][C]0.76[/C][C]0.94[/C][C]1.59[/C][C]1.18[/C][C]0.47[/C][C]0.12[/C][C]0.06[/C][/ROW]
[C]15[/C][C]0.06[/C][C]0.18[/C][C]0.18[/C][C]0.47[/C][C]0.76[/C][C]0.94[/C][C]1.59[/C][C]1.18[/C][C]0.47[/C][C]0.12[/C][C]0.06[/C][/ROW]
[C]16[/C][C]0.21[/C][C]0.62[/C][C]0.62[/C][C]1.65[/C][C]2.68[/C][C]3.29[/C][C]5.56[/C][C]4.12[/C][C]1.65[/C][C]0.41[/C][C]0.21[/C][/ROW]
[C]17[/C][C]0.19[/C][C]0.56[/C][C]0.56[/C][C]1.49[/C][C]2.42[/C][C]2.98[/C][C]5.03[/C][C]3.73[/C][C]1.49[/C][C]0.37[/C][C]0.19[/C][/ROW]
[C]18[/C][C]0.18[/C][C]0.53[/C][C]0.53[/C][C]1.41[/C][C]2.29[/C][C]2.82[/C][C]4.76[/C][C]3.53[/C][C]1.41[/C][C]0.35[/C][C]0.18[/C][/ROW]
[C]19[/C][C]0.2[/C][C]0.59[/C][C]0.59[/C][C]1.57[/C][C]2.55[/C][C]3.14[/C][C]5.29[/C][C]3.92[/C][C]1.57[/C][C]0.39[/C][C]0.2[/C][/ROW]
[C]20[/C][C]0.1[/C][C]0.29[/C][C]0.29[/C][C]0.78[/C][C]1.27[/C][C]1.57[/C][C]2.65[/C][C]1.96[/C][C]0.78[/C][C]0.2[/C][C]0.1[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=300906&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=300906&T=2

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Tabulation of Expected Results
IKSUM x TVDCSUM
	10	11	12	13	14	15	16	17	18	19	20
13	0.02	0.06	0.06	0.16	0.25	0.31	0.53	0.39	0.16	0.04	0.02
14	0.06	0.18	0.18	0.47	0.76	0.94	1.59	1.18	0.47	0.12	0.06
15	0.06	0.18	0.18	0.47	0.76	0.94	1.59	1.18	0.47	0.12	0.06
16	0.21	0.62	0.62	1.65	2.68	3.29	5.56	4.12	1.65	0.41	0.21
17	0.19	0.56	0.56	1.49	2.42	2.98	5.03	3.73	1.49	0.37	0.19
18	0.18	0.53	0.53	1.41	2.29	2.82	4.76	3.53	1.41	0.35	0.18
19	0.2	0.59	0.59	1.57	2.55	3.14	5.29	3.92	1.57	0.39	0.2
20	0.1	0.29	0.29	0.78	1.27	1.57	2.65	1.96	0.78	0.2	0.1

Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic	59.25
P value	0.8

\begin{tabular}{lllllllll}
\hline
Statistical Results \tabularnewline
Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates) \tabularnewline
Exact Pearson Chi Square Statistic & 59.25 \tabularnewline
P value & 0.8 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=300906&T=3

[TABLE]
[ROW][C]Statistical Results[/C][/ROW]
[ROW][C]Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates)[/C][/ROW]
[ROW][C]Exact Pearson Chi Square Statistic[/C][C]59.25[/C][/ROW]
[ROW][C]P value[/C][C]0.8[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=300906&T=3

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=300906&T=3

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic	59.25
P value	0.8

Figure 1

PNG link

Postscript link

PDF link

Parameters (Session):

par1 = 1 ; par2 = 2 ; par3 = Exact Pearson Chi-Squared by Simulation ;

Parameters (R input):

par1 = 1 ; par2 = 2 ; par3 = Exact Pearson Chi-Squared by Simulation ;

R code (references can be found in the software module):

library(vcd)
cat1 <- as.numeric(par1) #
cat2<- as.numeric(par2) #
simulate.p.value=FALSE
if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE
x <- t(x)
(z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,]))))
(table1 <- table(z[,cat1],z[,cat2]))
(V1<-dimnames(y)[[1]][cat1])
(V2<-dimnames(y)[[1]][cat2])
bitmap(file='pic1.png')
assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T)
dev.off()
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, table1[nr, nc], 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable.tab')
(cst<-chisq.test(table1, simulate.p.value=simulate.p.value) )
if (par3 == 'McNemar Chi-Squared') {
(cst <- mcnemar.test(table1))
}
if (par3=='Fisher Exact Test') {
(cst <- fisher.test(table1))
}
if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) {
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
}
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Statistical Results',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, cst$method, 2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE)
if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE)
if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE)
if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE)
if (par3=='Fisher Exact Test') {
if ((ncol(table1) == 2) & (nrow(table1) == 2)) {
a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE)
} else {
a<-table.element(a, '--', 1,FALSE)
}
} else {
a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE)
}
a<-table.row.end(a)
if(!simulate.p.value){
if(par3!='Fisher Exact Test') {
a<-table.row.start(a)
a<-table.element(a, 'Degrees of Freedom', 1, TRUE)
a<-table.element(a, cst$parameter, 1,FALSE)
a<-table.row.end(a)
}
}
a<-table.row.start(a)
a<-table.element(a, 'P value', 1, TRUE)
a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable2.tab')

Free Statistics

Description of Statistical Computation

Tree of Dependent Computations

Dataset

Tables (Output of Computation)

Figures (Output of Computation)

Input Parameters & R Code