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R Software Module

rwasp_chi_squared_tests.wasp

Title produced by software

Chi-Squared Test, McNemar Test, and Fisher Exact Test

Date of computation

Mon, 22 Oct 2012 13:25:08 -0400

Cite this page as follows

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2012/Oct/22/t1350926727ryvirsvpw51kbst.htm/, Retrieved Fri, 03 May 2024 16:15:48 +0000

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=181861, Retrieved Fri, 03 May 2024 16:15:48 +0000

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Estimated Impact

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)

-     [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2012-10-22 16:50:58] [739726dcd44895e1bbfe6a9ff78aefee]
-   PD    [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2012-10-22 17:25:08] [6a75692d68b560ebf35260ff627da44a] [Current]

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Boxplots

14	'A'
18	'C'
11	'B'
12	'C'
16	'A'
18	'D'
14	'D'
14	'B'
15	'B'
15	'A'
17	'D'
19	'B'
10	'B'
16	'A'
18	'A'
14	'C'
14	'C'
17	'A'
14	'A'
16	'C'
18	'C'
11	'D'
14	'A'
12	'A'
17	'C'
9	'C'
16	'B'
14	'A'
15	'C'
11	'C'
16	'D'
13	'C'
17	'D'
15	'A'
14	'D'
16	'C'
9	'D'
15	'C'
17	'D'
13	'C'
15	'C'
16	'C'
16	'C'
12	'C'
12	'D'
11	'B'
15	'A'
15	'B'
17	'A'
13	'C'
16	'A'
14	'D'
11	'C'
12	'A'
12	'C'
15	'C'
16	'B'
15	'B'
12	'B'
12	'B'
8	'D'
13	'B'
11	'B'
14	'B'
15	'D'
10	'A'
11	'B'
12	'D'
15	'A'
15	'A'
14	'B'
16	'A'
15	'A'
15	'A'
13	'D'
12	'D'
17	'A'
13	'D'
15	'D'
13	'D'
15	'B'
16	'A'
15	'A'
16	'C'
15	'B'
14	'D'
15	'A'
14	'B'
13	'C'
7	'C'
17	'B'
13	'C'
15	'A'
14	'D'
13	'D'
16	'B'
12	'B'
14	'D'
17	'B'
15	'B'
17	'B'
12	'B'
16	'A'
11	'D'
15	'A'
9	'C'
16	'B'
15	'A'
10	'B'
10	'A'
15	'B'
11	'C'
13	'A'
14	'C'
18	'B'
16	'C'
14	'A'
14	'A'
14	'B'
14	'B'
12	'A'
14	'D'
15	'A'
15	'A'
15	'D'
13	'C'
17	'C'
17	'A'
19	'B'
15	'C'
13	'C'
9	'C'
15	'A'
15	'D'
15	'A'
16	'D'
11	'D'
14	'B'
11	'B'
15	'B'
13	'B'
15	'B'
16	'B'
14	'B'
15	'D'
16	'D'
16	'D'
11	'B'
12	'D'
9	'C'
16	'A'
13	'A'
16	'A'
12	'A'
9	'B'
13	'D'
13	'C'
14	'A'
19	'B'
13	'C'
12	'B'
13	'B'

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	2 seconds
R Server	'Gwilym Jenkins' @ jenkins.wessa.net
R Framework error message	Warning: there are blank lines in the 'Data X' field. Please, use NA for missing data - blank lines are simply deleted and are NOT treated as missing values.

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 2 seconds \tabularnewline
R Server & 'Gwilym Jenkins' @ jenkins.wessa.net \tabularnewline
R Framework error message & Warning: there are blank lines in the 'Data X' field.
Please, use NA for missing data - blank lines are simply
 deleted and are NOT treated as missing values. \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=181861&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]2 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Gwilym Jenkins' @ jenkins.wessa.net[/C][/ROW]
[ROW][C]R Framework error message[/C][C]Warning: there are blank lines in the 'Data X' field.
Please, use NA for missing data - blank lines are simply
 deleted and are NOT treated as missing values.[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=181861&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=181861&T=0

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	2 seconds
R Server	'Gwilym Jenkins' @ jenkins.wessa.net
R Framework error message	Warning: there are blank lines in the 'Data X' field. Please, use NA for missing data - blank lines are simply deleted and are NOT treated as missing values.

Tabulation of Results
Hapiness x Seperated
	A	B	C	D
10	2	2	0	0
11	0	6	3	3
12	4	5	3	4
13	2	3	9	5
14	7	8	3	7
15	16	9	5	5
16	8	5	6	4
17	4	3	2	3
18	1	1	2	1
19	0	3	0	0
7	0	0	1	0
8	0	0	0	1
9	0	1	4	1

\begin{tabular}{lllllllll}
\hline
Tabulation of Results \tabularnewline
Hapiness  x  Seperated \tabularnewline
  & A & B & C & D \tabularnewline
10 & 2 & 2 & 0 & 0 \tabularnewline
11 & 0 & 6 & 3 & 3 \tabularnewline
12 & 4 & 5 & 3 & 4 \tabularnewline
13 & 2 & 3 & 9 & 5 \tabularnewline
14 & 7 & 8 & 3 & 7 \tabularnewline
15 & 16 & 9 & 5 & 5 \tabularnewline
16 & 8 & 5 & 6 & 4 \tabularnewline
17 & 4 & 3 & 2 & 3 \tabularnewline
18 & 1 & 1 & 2 & 1 \tabularnewline
19 & 0 & 3 & 0 & 0 \tabularnewline
7 & 0 & 0 & 1 & 0 \tabularnewline
8 & 0 & 0 & 0 & 1 \tabularnewline
9 & 0 & 1 & 4 & 1 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=181861&T=1

[TABLE]
[ROW][C]Tabulation of Results[/C][/ROW]
[ROW][C]Hapiness  x  Seperated[/C][/ROW]
[ROW][C] [/C][C]A[/C][C]B[/C][C]C[/C][C]D[/C][/ROW]
[C]10[/C][C]2[/C][C]2[/C][C]0[/C][C]0[/C][/ROW]
[C]11[/C][C]0[/C][C]6[/C][C]3[/C][C]3[/C][/ROW]
[C]12[/C][C]4[/C][C]5[/C][C]3[/C][C]4[/C][/ROW]
[C]13[/C][C]2[/C][C]3[/C][C]9[/C][C]5[/C][/ROW]
[C]14[/C][C]7[/C][C]8[/C][C]3[/C][C]7[/C][/ROW]
[C]15[/C][C]16[/C][C]9[/C][C]5[/C][C]5[/C][/ROW]
[C]16[/C][C]8[/C][C]5[/C][C]6[/C][C]4[/C][/ROW]
[C]17[/C][C]4[/C][C]3[/C][C]2[/C][C]3[/C][/ROW]
[C]18[/C][C]1[/C][C]1[/C][C]2[/C][C]1[/C][/ROW]
[C]19[/C][C]0[/C][C]3[/C][C]0[/C][C]0[/C][/ROW]
[C]7[/C][C]0[/C][C]0[/C][C]1[/C][C]0[/C][/ROW]
[C]8[/C][C]0[/C][C]0[/C][C]0[/C][C]1[/C][/ROW]
[C]9[/C][C]0[/C][C]1[/C][C]4[/C][C]1[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=181861&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=181861&T=1

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Tabulation of Results
Hapiness x Seperated
	A	B	C	D
10	2	2	0	0
11	0	6	3	3
12	4	5	3	4
13	2	3	9	5
14	7	8	3	7
15	16	9	5	5
16	8	5	6	4
17	4	3	2	3
18	1	1	2	1
19	0	3	0	0
7	0	0	1	0
8	0	0	0	1
9	0	1	4	1

Tabulation of Expected Results
Hapiness x Seperated
	A	B	C	D
10	1.09	1.14	0.94	0.84
11	3.26	3.41	2.81	2.52
12	4.35	4.54	3.75	3.36
13	5.16	5.4	4.46	3.99
14	6.79	7.1	5.86	5.25
15	9.51	9.94	8.21	7.35
16	6.25	6.53	5.4	4.83
17	3.26	3.41	2.81	2.52
18	1.36	1.42	1.17	1.05
19	0.81	0.85	0.7	0.63
7	0.27	0.28	0.23	0.21
8	0.27	0.28	0.23	0.21
9	1.63	1.7	1.41	1.26

\begin{tabular}{lllllllll}
\hline
Tabulation of Expected Results \tabularnewline
Hapiness  x  Seperated \tabularnewline
  & A & B & C & D \tabularnewline
10 & 1.09 & 1.14 & 0.94 & 0.84 \tabularnewline
11 & 3.26 & 3.41 & 2.81 & 2.52 \tabularnewline
12 & 4.35 & 4.54 & 3.75 & 3.36 \tabularnewline
13 & 5.16 & 5.4 & 4.46 & 3.99 \tabularnewline
14 & 6.79 & 7.1 & 5.86 & 5.25 \tabularnewline
15 & 9.51 & 9.94 & 8.21 & 7.35 \tabularnewline
16 & 6.25 & 6.53 & 5.4 & 4.83 \tabularnewline
17 & 3.26 & 3.41 & 2.81 & 2.52 \tabularnewline
18 & 1.36 & 1.42 & 1.17 & 1.05 \tabularnewline
19 & 0.81 & 0.85 & 0.7 & 0.63 \tabularnewline
7 & 0.27 & 0.28 & 0.23 & 0.21 \tabularnewline
8 & 0.27 & 0.28 & 0.23 & 0.21 \tabularnewline
9 & 1.63 & 1.7 & 1.41 & 1.26 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=181861&T=2

[TABLE]
[ROW][C]Tabulation of Expected Results[/C][/ROW]
[ROW][C]Hapiness  x  Seperated[/C][/ROW]
[ROW][C] [/C][C]A[/C][C]B[/C][C]C[/C][C]D[/C][/ROW]
[C]10[/C][C]1.09[/C][C]1.14[/C][C]0.94[/C][C]0.84[/C][/ROW]
[C]11[/C][C]3.26[/C][C]3.41[/C][C]2.81[/C][C]2.52[/C][/ROW]
[C]12[/C][C]4.35[/C][C]4.54[/C][C]3.75[/C][C]3.36[/C][/ROW]
[C]13[/C][C]5.16[/C][C]5.4[/C][C]4.46[/C][C]3.99[/C][/ROW]
[C]14[/C][C]6.79[/C][C]7.1[/C][C]5.86[/C][C]5.25[/C][/ROW]
[C]15[/C][C]9.51[/C][C]9.94[/C][C]8.21[/C][C]7.35[/C][/ROW]
[C]16[/C][C]6.25[/C][C]6.53[/C][C]5.4[/C][C]4.83[/C][/ROW]
[C]17[/C][C]3.26[/C][C]3.41[/C][C]2.81[/C][C]2.52[/C][/ROW]
[C]18[/C][C]1.36[/C][C]1.42[/C][C]1.17[/C][C]1.05[/C][/ROW]
[C]19[/C][C]0.81[/C][C]0.85[/C][C]0.7[/C][C]0.63[/C][/ROW]
[C]7[/C][C]0.27[/C][C]0.28[/C][C]0.23[/C][C]0.21[/C][/ROW]
[C]8[/C][C]0.27[/C][C]0.28[/C][C]0.23[/C][C]0.21[/C][/ROW]
[C]9[/C][C]1.63[/C][C]1.7[/C][C]1.41[/C][C]1.26[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=181861&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=181861&T=2

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Tabulation of Expected Results
Hapiness x Seperated
	A	B	C	D
10	1.09	1.14	0.94	0.84
11	3.26	3.41	2.81	2.52
12	4.35	4.54	3.75	3.36
13	5.16	5.4	4.46	3.99
14	6.79	7.1	5.86	5.25
15	9.51	9.94	8.21	7.35
16	6.25	6.53	5.4	4.83
17	3.26	3.41	2.81	2.52
18	1.36	1.42	1.17	1.05
19	0.81	0.85	0.7	0.63
7	0.27	0.28	0.23	0.21
8	0.27	0.28	0.23	0.21
9	1.63	1.7	1.41	1.26

Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic	49.16
P value	0.05

\begin{tabular}{lllllllll}
\hline
Statistical Results \tabularnewline
Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates) \tabularnewline
Exact Pearson Chi Square Statistic & 49.16 \tabularnewline
P value & 0.05 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=181861&T=3

[TABLE]
[ROW][C]Statistical Results[/C][/ROW]
[ROW][C]Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates)[/C][/ROW]
[ROW][C]Exact Pearson Chi Square Statistic[/C][C]49.16[/C][/ROW]
[ROW][C]P value[/C][C]0.05[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=181861&T=3

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=181861&T=3

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic	49.16
P value	0.05

Figure 1

PNG link

Postscript link

PDF link

Parameters (Session):

par1 = 1 ; par2 = 2 ; par3 = Exact Pearson Chi-Squared by Simulation ;

Parameters (R input):

par1 = 1 ; par2 = 2 ; par3 = Exact Pearson Chi-Squared by Simulation ;

R code (references can be found in the software module):

library(vcd)
cat1 <- as.numeric(par1) #
cat2<- as.numeric(par2) #
simulate.p.value=FALSE
if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE
x <- t(x)
(z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,]))))
(table1 <- table(z[,cat1],z[,cat2]))
(V1<-dimnames(y)[[1]][cat1])
(V2<-dimnames(y)[[1]][cat2])
bitmap(file='pic1.png')
assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T)
dev.off()
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, table1[nr, nc], 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable.tab')
(cst<-chisq.test(table1, simulate.p.value=simulate.p.value) )
if (par3 == 'McNemar Chi-Squared') {
(cst <- mcnemar.test(table1))
}
if (par3=='Fisher Exact Test') {
(cst <- fisher.test(table1))
}
if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) {
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
}
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Statistical Results',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, cst$method, 2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE)
if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE)
if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE)
if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE)
if (par3=='Fisher Exact Test') {
if ((ncol(table1) == 2) & (nrow(table1) == 2)) {
a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE)
} else {
a<-table.element(a, '--', 1,FALSE)
}
} else {
a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE)
}
a<-table.row.end(a)
if(!simulate.p.value){
if(par3!='Fisher Exact Test') {
a<-table.row.start(a)
a<-table.element(a, 'Degrees of Freedom', 1, TRUE)
a<-table.element(a, cst$parameter, 1,FALSE)
a<-table.row.end(a)
}
}
a<-table.row.start(a)
a<-table.element(a, 'P value', 1, TRUE)
a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable2.tab')

Free Statistics

Description of Statistical Computation

Tree of Dependent Computations

Dataset

Tables (Output of Computation)

Figures (Output of Computation)

Input Parameters & R Code