FreeStatistics.org

Free Statistics

of Irreproducible Research!

Description of Statistical Computation

Author's title

Author*Unverified author*
R Software Modulerwasp_hierarchicalclustering.wasp
Title produced by softwareHierarchical Clustering
Date of computationThu, 01 Nov 2007 08:06:54 -0700
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2007/Nov/01/tu1k3u300tyd6e31193929606.htm/, Retrieved Tue, 07 May 2024 09:10:18 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=102, Retrieved Tue, 07 May 2024 09:10:18 +0000
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywordsWorkshop 5, vraag 2
Estimated Impact220

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-       [Hierarchical Clustering] [Workshop 5 - vraag 2] [2007-11-01 15:06:54] [014bfc073eb4f6c1ae65a07cc44c50c0] [Current]
Feedback Forum

Post a new message

Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
99
115.4
106.9
107.1
99.3
99.2
108.3
105.6
99.5
107.4
93.1
88.1
110.7
113.1
99.6
93.6
98.6
99.6
114.3
107.8
101.2
112.5
100.5
93.9
116.2
112
106.4
95.7
96
95.8
103
102.2
98.4
111.4
86.6
91.3
107.9
101.8
104.4
93.4
100.1
98.5
112.9
101.4
107.1
110.8
90.3
95.5
111.4
113
107.5
95.9
106.3
105.2
117.2
106.9
108.2
110
96.1
100.6

Tables (Output of Computation)





Summary of compuational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time2 seconds
R Server'Herman Ole Andreas Wold' @ 193.190.124.10:1001

\begin{tabular}{lllllllll}
\hline
Summary of compuational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 2 seconds \tabularnewline
R Server & 'Herman Ole Andreas Wold' @ 193.190.124.10:1001 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=102&T=0

[TABLE]
[ROW][C]Summary of compuational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]2 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Herman Ole Andreas Wold' @ 193.190.124.10:1001[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=102&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=102&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of compuational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time2 seconds
R Server'Herman Ole Andreas Wold' @ 193.190.124.10:1001






Summary of Dendrogram
LabelHeight
10
20
30
40
50.0999999999999943
60.0999999999999943
70.0999999999999943
80.0999999999999943
90.0999999999999943
100.0999999999999943
110.0999999999999943
120.0999999999999943
130.0999999999999943
140.100000000000009
150.100000000000009
160.133333333333326
170.166666666666657
180.166666666666657
190.166666666666657
200.199999999999989
210.200000000000003
220.300000000000002
230.300000000000002
240.399999999999977
250.399999999999991
260.400000000000006
270.466666666666678
280.5
290.566666666666672
300.633333333333345
310.666666666666676
320.699999999999996
330.799999999999997
340.933333333333328
350.966666666666669
361
371.00000000000002
381.09999999999999
391.19999999999999
401.39333333333334
411.5
421.6
431.73333333333335
441.82000000000000
451.94999999999999
462.30666666666666
472.80000000000001
483.96333333333336
494.08333333333333
505.65000000000001
517.81333333333335
527.93333333333332
539.88666666666666
5412.7990196078431
5514.9285714285715
5623.8871428571429
5762.2006239737274
5870.1798590403903
59256.501449758991

\begin{tabular}{lllllllll}
\hline
Summary of Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0.0999999999999943 \tabularnewline
6 & 0.0999999999999943 \tabularnewline
7 & 0.0999999999999943 \tabularnewline
8 & 0.0999999999999943 \tabularnewline
9 & 0.0999999999999943 \tabularnewline
10 & 0.0999999999999943 \tabularnewline
11 & 0.0999999999999943 \tabularnewline
12 & 0.0999999999999943 \tabularnewline
13 & 0.0999999999999943 \tabularnewline
14 & 0.100000000000009 \tabularnewline
15 & 0.100000000000009 \tabularnewline
16 & 0.133333333333326 \tabularnewline
17 & 0.166666666666657 \tabularnewline
18 & 0.166666666666657 \tabularnewline
19 & 0.166666666666657 \tabularnewline
20 & 0.199999999999989 \tabularnewline
21 & 0.200000000000003 \tabularnewline
22 & 0.300000000000002 \tabularnewline
23 & 0.300000000000002 \tabularnewline
24 & 0.399999999999977 \tabularnewline
25 & 0.399999999999991 \tabularnewline
26 & 0.400000000000006 \tabularnewline
27 & 0.466666666666678 \tabularnewline
28 & 0.5 \tabularnewline
29 & 0.566666666666672 \tabularnewline
30 & 0.633333333333345 \tabularnewline
31 & 0.666666666666676 \tabularnewline
32 & 0.699999999999996 \tabularnewline
33 & 0.799999999999997 \tabularnewline
34 & 0.933333333333328 \tabularnewline
35 & 0.966666666666669 \tabularnewline
36 & 1 \tabularnewline
37 & 1.00000000000002 \tabularnewline
38 & 1.09999999999999 \tabularnewline
39 & 1.19999999999999 \tabularnewline
40 & 1.39333333333334 \tabularnewline
41 & 1.5 \tabularnewline
42 & 1.6 \tabularnewline
43 & 1.73333333333335 \tabularnewline
44 & 1.82000000000000 \tabularnewline
45 & 1.94999999999999 \tabularnewline
46 & 2.30666666666666 \tabularnewline
47 & 2.80000000000001 \tabularnewline
48 & 3.96333333333336 \tabularnewline
49 & 4.08333333333333 \tabularnewline
50 & 5.65000000000001 \tabularnewline
51 & 7.81333333333335 \tabularnewline
52 & 7.93333333333332 \tabularnewline
53 & 9.88666666666666 \tabularnewline
54 & 12.7990196078431 \tabularnewline
55 & 14.9285714285715 \tabularnewline
56 & 23.8871428571429 \tabularnewline
57 & 62.2006239737274 \tabularnewline
58 & 70.1798590403903 \tabularnewline
59 & 256.501449758991 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=102&T=1

[TABLE]
[ROW][C]Summary of Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]6[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]7[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]8[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]9[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]10[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]11[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]12[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]13[/C][C]0.0999999999999943[/C][/ROW]
[ROW][C]14[/C][C]0.100000000000009[/C][/ROW]
[ROW][C]15[/C][C]0.100000000000009[/C][/ROW]
[ROW][C]16[/C][C]0.133333333333326[/C][/ROW]
[ROW][C]17[/C][C]0.166666666666657[/C][/ROW]
[ROW][C]18[/C][C]0.166666666666657[/C][/ROW]
[ROW][C]19[/C][C]0.166666666666657[/C][/ROW]
[ROW][C]20[/C][C]0.199999999999989[/C][/ROW]
[ROW][C]21[/C][C]0.200000000000003[/C][/ROW]
[ROW][C]22[/C][C]0.300000000000002[/C][/ROW]
[ROW][C]23[/C][C]0.300000000000002[/C][/ROW]
[ROW][C]24[/C][C]0.399999999999977[/C][/ROW]
[ROW][C]25[/C][C]0.399999999999991[/C][/ROW]
[ROW][C]26[/C][C]0.400000000000006[/C][/ROW]
[ROW][C]27[/C][C]0.466666666666678[/C][/ROW]
[ROW][C]28[/C][C]0.5[/C][/ROW]
[ROW][C]29[/C][C]0.566666666666672[/C][/ROW]
[ROW][C]30[/C][C]0.633333333333345[/C][/ROW]
[ROW][C]31[/C][C]0.666666666666676[/C][/ROW]
[ROW][C]32[/C][C]0.699999999999996[/C][/ROW]
[ROW][C]33[/C][C]0.799999999999997[/C][/ROW]
[ROW][C]34[/C][C]0.933333333333328[/C][/ROW]
[ROW][C]35[/C][C]0.966666666666669[/C][/ROW]
[ROW][C]36[/C][C]1[/C][/ROW]
[ROW][C]37[/C][C]1.00000000000002[/C][/ROW]
[ROW][C]38[/C][C]1.09999999999999[/C][/ROW]
[ROW][C]39[/C][C]1.19999999999999[/C][/ROW]
[ROW][C]40[/C][C]1.39333333333334[/C][/ROW]
[ROW][C]41[/C][C]1.5[/C][/ROW]
[ROW][C]42[/C][C]1.6[/C][/ROW]
[ROW][C]43[/C][C]1.73333333333335[/C][/ROW]
[ROW][C]44[/C][C]1.82000000000000[/C][/ROW]
[ROW][C]45[/C][C]1.94999999999999[/C][/ROW]
[ROW][C]46[/C][C]2.30666666666666[/C][/ROW]
[ROW][C]47[/C][C]2.80000000000001[/C][/ROW]
[ROW][C]48[/C][C]3.96333333333336[/C][/ROW]
[ROW][C]49[/C][C]4.08333333333333[/C][/ROW]
[ROW][C]50[/C][C]5.65000000000001[/C][/ROW]
[ROW][C]51[/C][C]7.81333333333335[/C][/ROW]
[ROW][C]52[/C][C]7.93333333333332[/C][/ROW]
[ROW][C]53[/C][C]9.88666666666666[/C][/ROW]
[ROW][C]54[/C][C]12.7990196078431[/C][/ROW]
[ROW][C]55[/C][C]14.9285714285715[/C][/ROW]
[ROW][C]56[/C][C]23.8871428571429[/C][/ROW]
[ROW][C]57[/C][C]62.2006239737274[/C][/ROW]
[ROW][C]58[/C][C]70.1798590403903[/C][/ROW]
[ROW][C]59[/C][C]256.501449758991[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=102&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=102&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of Dendrogram
LabelHeight
10
20
30
40
50.0999999999999943
60.0999999999999943
70.0999999999999943
80.0999999999999943
90.0999999999999943
100.0999999999999943
110.0999999999999943
120.0999999999999943
130.0999999999999943
140.100000000000009
150.100000000000009
160.133333333333326
170.166666666666657
180.166666666666657
190.166666666666657
200.199999999999989
210.200000000000003
220.300000000000002
230.300000000000002
240.399999999999977
250.399999999999991
260.400000000000006
270.466666666666678
280.5
290.566666666666672
300.633333333333345
310.666666666666676
320.699999999999996
330.799999999999997
340.933333333333328
350.966666666666669
361
371.00000000000002
381.09999999999999
391.19999999999999
401.39333333333334
411.5
421.6
431.73333333333335
441.82000000000000
451.94999999999999
462.30666666666666
472.80000000000001
483.96333333333336
494.08333333333333
505.65000000000001
517.81333333333335
527.93333333333332
539.88666666666666
5412.7990196078431
5514.9285714285715
5623.8871428571429
5762.2006239737274
5870.1798590403903
59256.501449758991


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
Parameters (R input):
par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
R code (references can be found in the software module):
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}