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Description of Statistical Computation

Author's title

Author*Unverified author*
R Software Modulerwasp_hierarchicalclustering.wasp
Title produced by softwareHierarchical Clustering
Date of computationThu, 01 Nov 2007 12:05:09 -0700
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2007/Nov/01/gmzwtrnu9vy8g8i1193943903.htm/, Retrieved Tue, 07 May 2024 11:42:06 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=57, Retrieved Tue, 07 May 2024 11:42:06 +0000
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact193

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-       [Hierarchical Clustering] [] [2007-11-01 19:05:09] [94abaf6e1c7b1fd4f9d5e2c2d987f350] [Current]
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Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
99.90
99.80
99.80
100.30
99.90
99.90
100.00
100.10
100.10
100.20
100.30
100.60
100.00
100.10
100.20
100.00
100.10
100.10
100.10
100.50
100.50
100.50
96.30
96.30
96.80
96.80
96.90
96.80
96.80
96.80
96.80
97.00
97.00
97.00
96.80
96.90
97.20
97.30
97.30
97.20
97.30
97.30
97.30
97.30
97.30
97.30
98.10
96.80
96.80
96.80
96.80
96.80
96.80
96.80
96.80
96.80
96.80
96.80
96.90
97.10
97.10

Tables (Output of Computation)





Summary of compuational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time3 seconds
R Server'Gwilym Jenkins' @ 72.249.127.135

\begin{tabular}{lllllllll}
\hline
Summary of compuational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 3 seconds \tabularnewline
R Server & 'Gwilym Jenkins' @ 72.249.127.135 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=57&T=0

[TABLE]
[ROW][C]Summary of compuational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]3 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Gwilym Jenkins' @ 72.249.127.135[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=57&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=57&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of compuational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time3 seconds
R Server'Gwilym Jenkins' @ 72.249.127.135






Summary of Dendrogram
LabelHeight
10
20
30
40
50
60
70
80
90
100
110
120
130
140
150
160
170
180
190
200
210
220
230
240
250
260
270
280
290
300
310
320
330
340
350
360
370
380
390
400
410
420
430
440
450
460.149999999999991
470.199999999999989
480.200000000000017
490.240000000000020
500.299999999999983
510.399999999999977
520.666666666666648
530.75384615384619
541.12500000000006
551.35059829059824
561.50256410256410
571.875
582.45101010101011
596.32051282051279
6081.2254576025068

\begin{tabular}{lllllllll}
\hline
Summary of Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0 \tabularnewline
6 & 0 \tabularnewline
7 & 0 \tabularnewline
8 & 0 \tabularnewline
9 & 0 \tabularnewline
10 & 0 \tabularnewline
11 & 0 \tabularnewline
12 & 0 \tabularnewline
13 & 0 \tabularnewline
14 & 0 \tabularnewline
15 & 0 \tabularnewline
16 & 0 \tabularnewline
17 & 0 \tabularnewline
18 & 0 \tabularnewline
19 & 0 \tabularnewline
20 & 0 \tabularnewline
21 & 0 \tabularnewline
22 & 0 \tabularnewline
23 & 0 \tabularnewline
24 & 0 \tabularnewline
25 & 0 \tabularnewline
26 & 0 \tabularnewline
27 & 0 \tabularnewline
28 & 0 \tabularnewline
29 & 0 \tabularnewline
30 & 0 \tabularnewline
31 & 0 \tabularnewline
32 & 0 \tabularnewline
33 & 0 \tabularnewline
34 & 0 \tabularnewline
35 & 0 \tabularnewline
36 & 0 \tabularnewline
37 & 0 \tabularnewline
38 & 0 \tabularnewline
39 & 0 \tabularnewline
40 & 0 \tabularnewline
41 & 0 \tabularnewline
42 & 0 \tabularnewline
43 & 0 \tabularnewline
44 & 0 \tabularnewline
45 & 0 \tabularnewline
46 & 0.149999999999991 \tabularnewline
47 & 0.199999999999989 \tabularnewline
48 & 0.200000000000017 \tabularnewline
49 & 0.240000000000020 \tabularnewline
50 & 0.299999999999983 \tabularnewline
51 & 0.399999999999977 \tabularnewline
52 & 0.666666666666648 \tabularnewline
53 & 0.75384615384619 \tabularnewline
54 & 1.12500000000006 \tabularnewline
55 & 1.35059829059824 \tabularnewline
56 & 1.50256410256410 \tabularnewline
57 & 1.875 \tabularnewline
58 & 2.45101010101011 \tabularnewline
59 & 6.32051282051279 \tabularnewline
60 & 81.2254576025068 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=57&T=1

[TABLE]
[ROW][C]Summary of Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0[/C][/ROW]
[ROW][C]6[/C][C]0[/C][/ROW]
[ROW][C]7[/C][C]0[/C][/ROW]
[ROW][C]8[/C][C]0[/C][/ROW]
[ROW][C]9[/C][C]0[/C][/ROW]
[ROW][C]10[/C][C]0[/C][/ROW]
[ROW][C]11[/C][C]0[/C][/ROW]
[ROW][C]12[/C][C]0[/C][/ROW]
[ROW][C]13[/C][C]0[/C][/ROW]
[ROW][C]14[/C][C]0[/C][/ROW]
[ROW][C]15[/C][C]0[/C][/ROW]
[ROW][C]16[/C][C]0[/C][/ROW]
[ROW][C]17[/C][C]0[/C][/ROW]
[ROW][C]18[/C][C]0[/C][/ROW]
[ROW][C]19[/C][C]0[/C][/ROW]
[ROW][C]20[/C][C]0[/C][/ROW]
[ROW][C]21[/C][C]0[/C][/ROW]
[ROW][C]22[/C][C]0[/C][/ROW]
[ROW][C]23[/C][C]0[/C][/ROW]
[ROW][C]24[/C][C]0[/C][/ROW]
[ROW][C]25[/C][C]0[/C][/ROW]
[ROW][C]26[/C][C]0[/C][/ROW]
[ROW][C]27[/C][C]0[/C][/ROW]
[ROW][C]28[/C][C]0[/C][/ROW]
[ROW][C]29[/C][C]0[/C][/ROW]
[ROW][C]30[/C][C]0[/C][/ROW]
[ROW][C]31[/C][C]0[/C][/ROW]
[ROW][C]32[/C][C]0[/C][/ROW]
[ROW][C]33[/C][C]0[/C][/ROW]
[ROW][C]34[/C][C]0[/C][/ROW]
[ROW][C]35[/C][C]0[/C][/ROW]
[ROW][C]36[/C][C]0[/C][/ROW]
[ROW][C]37[/C][C]0[/C][/ROW]
[ROW][C]38[/C][C]0[/C][/ROW]
[ROW][C]39[/C][C]0[/C][/ROW]
[ROW][C]40[/C][C]0[/C][/ROW]
[ROW][C]41[/C][C]0[/C][/ROW]
[ROW][C]42[/C][C]0[/C][/ROW]
[ROW][C]43[/C][C]0[/C][/ROW]
[ROW][C]44[/C][C]0[/C][/ROW]
[ROW][C]45[/C][C]0[/C][/ROW]
[ROW][C]46[/C][C]0.149999999999991[/C][/ROW]
[ROW][C]47[/C][C]0.199999999999989[/C][/ROW]
[ROW][C]48[/C][C]0.200000000000017[/C][/ROW]
[ROW][C]49[/C][C]0.240000000000020[/C][/ROW]
[ROW][C]50[/C][C]0.299999999999983[/C][/ROW]
[ROW][C]51[/C][C]0.399999999999977[/C][/ROW]
[ROW][C]52[/C][C]0.666666666666648[/C][/ROW]
[ROW][C]53[/C][C]0.75384615384619[/C][/ROW]
[ROW][C]54[/C][C]1.12500000000006[/C][/ROW]
[ROW][C]55[/C][C]1.35059829059824[/C][/ROW]
[ROW][C]56[/C][C]1.50256410256410[/C][/ROW]
[ROW][C]57[/C][C]1.875[/C][/ROW]
[ROW][C]58[/C][C]2.45101010101011[/C][/ROW]
[ROW][C]59[/C][C]6.32051282051279[/C][/ROW]
[ROW][C]60[/C][C]81.2254576025068[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=57&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=57&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of Dendrogram
LabelHeight
10
20
30
40
50
60
70
80
90
100
110
120
130
140
150
160
170
180
190
200
210
220
230
240
250
260
270
280
290
300
310
320
330
340
350
360
370
380
390
400
410
420
430
440
450
460.149999999999991
470.199999999999989
480.200000000000017
490.240000000000020
500.299999999999983
510.399999999999977
520.666666666666648
530.75384615384619
541.12500000000006
551.35059829059824
561.50256410256410
571.875
582.45101010101011
596.32051282051279
6081.2254576025068


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
Parameters (R input):
par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
R code (references can be found in the software module):
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}