paper
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.51986841535706 |
| 2 | 1.97484176581314 |
| 3 | 2.01246117974981 |
| 4 | 2.82488937836510 |
| 5 | 2.90516780926679 |
| 6 | 2.9698484809835 |
| 7 | 3.03315017762062 |
| 8 | 3.05450486986026 |
| 9 | 3.14006369362151 |
| 10 | 3.16385840391127 |
| 11 | 3.53553390593274 |
| 12 | 3.54541958024717 |
| 13 | 3.57351367704112 |
| 14 | 3.9255572852781 |
| 15 | 3.99624824053762 |
| 16 | 4.01497197997696 |
| 17 | 4.03360880601975 |
| 18 | 4.20119030752 |
| 19 | 4.24146201208969 |
| 20 | 4.47995535692043 |
| 21 | 5.32259335286849 |
| 22 | 5.37028863283903 |
| 23 | 5.49636243346452 |
| 24 | 5.55517776493245 |
| 25 | 5.56116431211975 |
| 26 | 5.57584026246159 |
| 27 | 6.07376492736444 |
| 28 | 6.56201188660917 |
| 29 | 6.70987042010081 |
| 30 | 7.12297742613039 |
| 31 | 7.56891971418106 |
| 32 | 7.95201949437366 |
| 33 | 7.99631006768038 |
| 34 | 8.02184517427256 |
| 35 | 8.12065295182214 |
| 36 | 8.1872419873922 |
| 37 | 8.21561582749469 |
| 38 | 8.32886546895794 |
| 39 | 8.57554662980734 |
| 40 | 9.0321674102571 |
| 41 | 9.07524104363074 |
| 42 | 9.42333855105635 |
| 43 | 9.48135684894045 |
| 44 | 9.64624279188536 |
| 45 | 10.4527508341106 |
| 46 | 10.9016093571052 |
| 47 | 11.5697643437436 |
| 48 | 11.7393922532449 |
| 49 | 11.8997043162546 |
| 50 | 12.3623326350073 |
| 51 | 12.3878973195615 |
| 52 | 13.4201785324492 |
| 53 | 14.2240552376252 |
| 54 | 14.5176298178522 |
| 55 | 14.8035519417472 |
| 56 | 16.9181929480329 |
| 57 | 17.7726438480242 |
| 58 | 17.8845879366242 |
| 59 | 17.9796423013800 |
| 60 | 19.1654105920298 |
| 61 | 20.8181545887518 |
| 62 | 23.0932035390893 |
| 63 | 24.4867985725525 |
| 64 | 24.9013041131454 |
| 65 | 25.9603182125375 |
| 66 | 31.5420308494674 |
| 67 | 36.5159944913662 |
| 68 | 37.3895657235242 |
| 69 | 47.7613293810131 |
| 70 | 47.7771377975562 |
| 71 | 54.7250029057309 |
| 72 | 57.7723710737579 |
| 73 | 70.1473886356615 |
| 74 | 71.9044527827645 |
| 75 | 71.9538798655109 |
| 76 | 138.808091055222 |
| 77 | 152.031189639636 |
| 78 | 403.878745038168 |
| 79 | 507.816613145297 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/10/t1194693854t248aee242sibph/15mtb1194694085.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/10/t1194693854t248aee242sibph/15mtb1194694085.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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