hierarchical clustering
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.59059737205869 |
| 2 | 3.20936130717624 |
| 3 | 3.25576411921994 |
| 4 | 3.52562051276084 |
| 5 | 4.57820925690386 |
| 6 | 5.175905717843 |
| 7 | 5.68066897468951 |
| 8 | 6.12438931013497 |
| 9 | 6.20886463051015 |
| 10 | 6.66333249958307 |
| 11 | 7.48999332442961 |
| 12 | 7.77560287051749 |
| 13 | 8.15720540381325 |
| 14 | 9.62808392152875 |
| 15 | 10.1975487250613 |
| 16 | 10.2796543061681 |
| 17 | 10.8430912916896 |
| 18 | 11.2778544058699 |
| 19 | 11.5844723660597 |
| 20 | 11.8080481028831 |
| 21 | 11.8241278748160 |
| 22 | 14.1446102809515 |
| 23 | 14.7342365347412 |
| 24 | 15.7467456955397 |
| 25 | 17.6184562320312 |
| 26 | 17.8964328711026 |
| 27 | 19.3359556887245 |
| 28 | 19.9546986947936 |
| 29 | 20.2349701761538 |
| 30 | 20.3263432145169 |
| 31 | 21.1839258603736 |
| 32 | 21.4366382779137 |
| 33 | 21.8380402051100 |
| 34 | 25.589034711971 |
| 35 | 28.5424536737741 |
| 36 | 28.836328276247 |
| 37 | 30.1824864808308 |
| 38 | 30.9606046745631 |
| 39 | 40.0243536815488 |
| 40 | 40.4537529569372 |
| 41 | 45.4252851537586 |
| 42 | 46.5804363084871 |
| 43 | 47.327049623301 |
| 44 | 53.7458605364445 |
| 45 | 61.6678346389096 |
| 46 | 65.5590180930103 |
| 47 | 66.4327692151587 |
| 48 | 68.8183658341696 |
| 49 | 96.987783624418 |
| 50 | 98.8066877593632 |
| 51 | 111.577760566497 |
| 52 | 127.412914111299 |
| 53 | 171.899732406559 |
| 54 | 213.521190000939 |
| 55 | 214.456311085589 |
| 56 | 302.315502706050 |
| 57 | 764.749376729712 |
| 58 | 1221.40936314200 |
| 59 | 3413.92226502828 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/y5kd1ibe3kin5bg1194257197/1xk1r1194257173.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/y5kd1ibe3kin5bg1194257197/1xk1r1194257173.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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