Q2 Dendrogram
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.51986841535707 |
| 2 | 2.96816441593117 |
| 3 | 3.42490875790873 |
| 4 | 3.87685439499603 |
| 5 | 4.03856410126174 |
| 6 | 4.20713679359253 |
| 7 | 4.40227214061103 |
| 8 | 4.46318272088427 |
| 9 | 5.00199960015992 |
| 10 | 5.45985347788748 |
| 11 | 5.77754273026173 |
| 12 | 5.95556165108892 |
| 13 | 6.74610999020918 |
| 14 | 7.53193202306023 |
| 15 | 7.73162111854456 |
| 16 | 7.76493469414086 |
| 17 | 7.77075233967372 |
| 18 | 7.81152993977492 |
| 19 | 8.10803130766324 |
| 20 | 8.55277732669336 |
| 21 | 8.56187476994479 |
| 22 | 8.6729464428186 |
| 23 | 8.9392393412415 |
| 24 | 9.20148439701667 |
| 25 | 9.3706568593473 |
| 26 | 9.49351784534597 |
| 27 | 10.1077690607966 |
| 28 | 10.3927859595009 |
| 29 | 10.7776222316501 |
| 30 | 11.3135694991563 |
| 31 | 11.3472463620034 |
| 32 | 11.5598442896087 |
| 33 | 11.9705079896396 |
| 34 | 12.8428682803040 |
| 35 | 13.7837211523946 |
| 36 | 14.5893865363313 |
| 37 | 15.1026623411332 |
| 38 | 15.6144164156077 |
| 39 | 15.8789738600582 |
| 40 | 15.8988266296851 |
| 41 | 18.7057275853576 |
| 42 | 19.1563018470054 |
| 43 | 20.9202580686970 |
| 44 | 20.9768171177605 |
| 45 | 24.7672985653974 |
| 46 | 27.635753303834 |
| 47 | 27.7703816419078 |
| 48 | 29.5016533524986 |
| 49 | 35.0342692904719 |
| 50 | 36.2000486847536 |
| 51 | 38.1613643971129 |
| 52 | 43.6878425180021 |
| 53 | 56.8296496129134 |
| 54 | 56.9369615798996 |
| 55 | 57.4872566337914 |
| 56 | 110.562460455701 |
| 57 | 113.651598434183 |
| 58 | 268.632436258444 |
| 59 | 601.92664096967 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/ofxs5zjsqn3xw2v1194293627/1656p1194293762.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/ofxs5zjsqn3xw2v1194293627/1656p1194293762.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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