Hierarchical Clustering 2-3-4
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 2 seconds |
| R Server | 'Herman Ole Andreas Wold' @ 193.190.124.10:1001 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 0.113578166916017 |
| 2 | 0.121243556529819 |
| 3 | 0.190262975904402 |
| 4 | 0.237486841740764 |
| 5 | 0.300998338865841 |
| 6 | 0.363042697213426 |
| 7 | 0.369999999999998 |
| 8 | 0.372117007763818 |
| 9 | 0.393700393700587 |
| 10 | 0.399749921826135 |
| 11 | 0.434281015012176 |
| 12 | 0.464435140789321 |
| 13 | 0.468187996428788 |
| 14 | 0.4920365840057 |
| 15 | 0.496588360717408 |
| 16 | 0.508428952755446 |
| 17 | 0.517179285942752 |
| 18 | 0.537680202350804 |
| 19 | 0.567687272051333 |
| 20 | 0.626578007912822 |
| 21 | 0.631347764706574 |
| 22 | 0.700935878845686 |
| 23 | 0.716798437498292 |
| 24 | 0.733613420050094 |
| 25 | 0.743370701601829 |
| 26 | 0.759341820262776 |
| 27 | 0.770328591422721 |
| 28 | 0.798895748926185 |
| 29 | 0.885494212290515 |
| 30 | 0.911540072305766 |
| 31 | 0.915276492748528 |
| 32 | 0.916414357507572 |
| 33 | 1.04395304116301 |
| 34 | 1.18122817440154 |
| 35 | 1.19743498929958 |
| 36 | 1.21652832783331 |
| 37 | 1.35021460344662 |
| 38 | 1.38973514447811 |
| 39 | 1.39187857104455 |
| 40 | 1.53948868551752 |
| 41 | 1.57082614490305 |
| 42 | 1.902420550976 |
| 43 | 2.13612302239588 |
| 44 | 2.25982880903068 |
| 45 | 2.28316981868216 |
| 46 | 2.43846239797042 |
| 47 | 2.51823609763752 |
| 48 | 3.71718033650766 |
| 49 | 3.92449085428042 |
| 50 | 5.76489248090338 |
| 51 | 6.07779028539958 |
| 52 | 7.58240655780845 |
| 53 | 9.72772979470928 |
| 54 | 11.6747725340286 |
| 55 | 18.5817510902330 |
| 56 | 28.4375788186346 |
| 57 | 43.9701927653905 |
| 58 | 62.5409338314192 |
| 59 | 212.445235199112 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/58h8jvh66klfv1z1194288577/1gbjk1194288636.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/58h8jvh66klfv1z1194288577/1gbjk1194288636.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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