Various EDA topics
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.81934053986603 |
| 2 | 3.4957116585897 |
| 3 | 3.63180395946697 |
| 4 | 4.33474336033865 |
| 5 | 5.22206855565876 |
| 6 | 5.60267793113257 |
| 7 | 5.74512072532152 |
| 8 | 5.80896927782118 |
| 9 | 6.04648658313239 |
| 10 | 6.107372593841 |
| 11 | 6.45368112010501 |
| 12 | 6.68318991623895 |
| 13 | 6.70856395188957 |
| 14 | 6.81102048154313 |
| 15 | 6.83260979020074 |
| 16 | 6.8622153857191 |
| 17 | 6.9570635694692 |
| 18 | 7.01284535691469 |
| 19 | 7.4083140899238 |
| 20 | 7.57343886962343 |
| 21 | 7.96271809360783 |
| 22 | 7.70067939697619 |
| 23 | 7.74391660490514 |
| 24 | 8.08577866488946 |
| 25 | 8.29095893126965 |
| 26 | 7.51037217573801 |
| 27 | 7.94376386896572 |
| 28 | 7.49156230923087 |
| 29 | 8.39521515116436 |
| 30 | 8.61961785807173 |
| 31 | 8.85607136375944 |
| 32 | 8.88675723499887 |
| 33 | 8.8336632419453 |
| 34 | 8.91976550282563 |
| 35 | 8.21826678172368 |
| 36 | 8.59385614668311 |
| 37 | 9.06587006304414 |
| 38 | 9.07634287585039 |
| 39 | 9.21848623328527 |
| 40 | 9.29070268016596 |
| 41 | 9.0290314497483 |
| 42 | 9.38657694801817 |
| 43 | 9.66436754267965 |
| 44 | 9.88155467921738 |
| 45 | 9.22074492388363 |
| 46 | 10.3614670775909 |
| 47 | 9.0145275409285 |
| 48 | 8.92164046755097 |
| 49 | 10.7252559029533 |
| 50 | 11.0257465898430 |
| 51 | 11.1190299629814 |
| 52 | 11.3220627930350 |
| 53 | 11.5326938832682 |
| 54 | 11.9829738307730 |
| 55 | 12.9772900194014 |
| 56 | 10.7200986181489 |
| 57 | 13.1374055311728 |
| 58 | 13.2018424987335 |
| 59 | 13.2292277162367 |
| 60 | 13.5952321659580 |
| 61 | 14.1296382069122 |
| 62 | 15.2849599279815 |
| 63 | 15.3049958376085 |
| 64 | 16.5753917415342 |
| 65 | 13.8608601027515 |
| 66 | 16.7485198699959 |
| 67 | 16.5514915500870 |
| 68 | 16.867127793433 |
| 69 | 16.7515655982834 |
| 70 | 21.4437693692230 |
| 71 | 20.6974630812794 |
| 72 | 21.3183210611272 |
| 73 | 24.0019345695498 |
| 74 | 24.7991840079771 |
| 75 | 22.1667598959838 |
| 76 | 26.3343789736007 |
| 77 | 41.7485457345893 |
| 78 | 49.1853350459952 |
| 79 | 56.1162166642157 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/tag0qrgvevr72ca1194170106/1k7bf1194170189.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/tag0qrgvevr72ca1194170106/1k7bf1194170189.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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