Various EDA topics
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.81934053986603 |
| 2 | 3.4957116585897 |
| 3 | 3.63180395946697 |
| 4 | 4.33474336033865 |
| 5 | 5.22206855565876 |
| 6 | 5.60267793113257 |
| 7 | 6 |
| 8 | 6.04648658313239 |
| 9 | 6.107372593841 |
| 10 | 6.45368112010501 |
| 11 | 6.65307171518826 |
| 12 | 6.81102048154313 |
| 13 | 6.8622153857191 |
| 14 | 7.01284535691469 |
| 15 | 7.71686464828818 |
| 16 | 7.79224979197423 |
| 17 | 8.29095893126965 |
| 18 | 8.53536491058652 |
| 19 | 8.54934733822503 |
| 20 | 8.85607136375944 |
| 21 | 9.06587006304414 |
| 22 | 9.07634287585039 |
| 23 | 9.16152542915247 |
| 24 | 9.24820586402077 |
| 25 | 9.66436754267965 |
| 26 | 9.78407423951499 |
| 27 | 10.2768202186218 |
| 28 | 10.3614670775909 |
| 29 | 10.4934767274156 |
| 30 | 10.5240033722000 |
| 31 | 10.8023243259491 |
| 32 | 10.8207028470378 |
| 33 | 10.9134200964784 |
| 34 | 11.0035207123062 |
| 35 | 11.028341938512 |
| 36 | 11.6805505127767 |
| 37 | 11.8214497038615 |
| 38 | 11.9050409491106 |
| 39 | 12.0660681251185 |
| 40 | 12.1013798091961 |
| 41 | 12.3211200789539 |
| 42 | 12.7960872940759 |
| 43 | 13.4925905592662 |
| 44 | 13.521855814108 |
| 45 | 13.5552422654116 |
| 46 | 13.6471718125107 |
| 47 | 13.8713618260873 |
| 48 | 14.3893216315851 |
| 49 | 14.5860555258083 |
| 50 | 14.6364953040235 |
| 51 | 15.2849599279815 |
| 52 | 15.4116114581087 |
| 53 | 15.7076414524906 |
| 54 | 15.9276708365762 |
| 55 | 16.0003889381927 |
| 56 | 16.6905870560931 |
| 57 | 16.867127793433 |
| 58 | 17.1777009237376 |
| 59 | 18.0812672930959 |
| 60 | 18.0826863603394 |
| 61 | 18.2427119390037 |
| 62 | 19.6328005933232 |
| 63 | 21.8746900591820 |
| 64 | 22.058905609594 |
| 65 | 23.1040882766312 |
| 66 | 23.5561968002172 |
| 67 | 24.3932028969486 |
| 68 | 26.5379765883438 |
| 69 | 26.6863336551662 |
| 70 | 28.2790986002908 |
| 71 | 29.4936610150478 |
| 72 | 30.1725727574364 |
| 73 | 33.2012570156019 |
| 74 | 36.5277669948092 |
| 75 | 36.7888819154980 |
| 76 | 42.3089801689107 |
| 77 | 44.6293643873411 |
| 78 | 46.1523773536167 |
| 79 | 54.7487303955624 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/t9lusx4lpxqmovm1194170254/1xbw21194170312.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/t9lusx4lpxqmovm1194170254/1xbw21194170312.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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