Various EDA topics
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 3 seconds |
| R Server | 'Herman Ole Andreas Wold' @ 193.190.124.10:1001 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.81934053986603 |
| 2 | 3.4957116585897 |
| 3 | 3.63180395946697 |
| 4 | 4.33474336033865 |
| 5 | 5.22206855565876 |
| 6 | 5.60267793113257 |
| 7 | 5.74512072532152 |
| 8 | 6 |
| 9 | 6.04648658313239 |
| 10 | 6.107372593841 |
| 11 | 6.15860636429864 |
| 12 | 6.45368112010501 |
| 13 | 6.70856395188957 |
| 14 | 6.81102048154313 |
| 15 | 6.83260979020074 |
| 16 | 6.8622153857191 |
| 17 | 7.0128453569147 |
| 18 | 7.16449382464336 |
| 19 | 7.4083140899238 |
| 20 | 7.1214799907029 |
| 21 | 7.71686464828818 |
| 22 | 7.81092289440219 |
| 23 | 7.91086731317946 |
| 24 | 7.94059340560206 |
| 25 | 6.45490195478208 |
| 26 | 7.96271809360783 |
| 27 | 7.70067939697618 |
| 28 | 8.29095893126965 |
| 29 | 7.51037217573801 |
| 30 | 7.94376386896572 |
| 31 | 8.5041681997451 |
| 32 | 8.8164575574843 |
| 33 | 8.85607136375944 |
| 34 | 9.05437634040932 |
| 35 | 7.83392803491776 |
| 36 | 9.0763428758504 |
| 37 | 9.21848623328527 |
| 38 | 9.29070268016596 |
| 39 | 8.66339340060193 |
| 40 | 8.98480689422498 |
| 41 | 9.38657694801817 |
| 42 | 9.66436754267965 |
| 43 | 9.88155467921738 |
| 44 | 9.06835604025559 |
| 45 | 9.99780818937634 |
| 46 | 8.03111599037432 |
| 47 | 10.3153385059235 |
| 48 | 10.8988069450278 |
| 49 | 11.3774274251371 |
| 50 | 11.4240368413407 |
| 51 | 10.0170600693164 |
| 52 | 11.5200112198508 |
| 53 | 12.1415308903006 |
| 54 | 12.6197775493412 |
| 55 | 12.7331168478134 |
| 56 | 10.5384334583787 |
| 57 | 13.1929396056270 |
| 58 | 10.5316914252772 |
| 59 | 13.7854807631251 |
| 60 | 14.9393558791966 |
| 61 | 13.7377260595379 |
| 62 | 14.9566146749838 |
| 63 | 15.2849599279815 |
| 64 | 15.5326126998364 |
| 65 | 13.4674105878907 |
| 66 | 15.6674895966346 |
| 67 | 16.867127793433 |
| 68 | 18.8083300857208 |
| 69 | 19.3647943879523 |
| 70 | 19.6540748901031 |
| 71 | 20.5663113863241 |
| 72 | 21.3203126005834 |
| 73 | 21.1238745486285 |
| 74 | 22.8397962092912 |
| 75 | 27.0414620405192 |
| 76 | 29.7263816441574 |
| 77 | 29.9564287500552 |
| 78 | 49.2470366998065 |
| 79 | 43.1842717413311 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/s6on5zk06p7f2vb1194182669/1tgab1194182542.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/s6on5zk06p7f2vb1194182669/1tgab1194182542.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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