Various EDA topics
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 2 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.81934053986603 |
| 2 | 3.4957116585897 |
| 3 | 3.63180395946697 |
| 4 | 4.33474336033865 |
| 5 | 5.22206855565876 |
| 6 | 5.60267793113257 |
| 7 | 6 |
| 8 | 6.04648658313239 |
| 9 | 6.107372593841 |
| 10 | 6.13188388670235 |
| 11 | 6.45368112010501 |
| 12 | 6.54140657657052 |
| 13 | 6.81102048154313 |
| 14 | 6.8622153857191 |
| 15 | 7.01284535691469 |
| 16 | 7.0547856097829 |
| 17 | 7.14002801114953 |
| 18 | 7.20416546173115 |
| 19 | 7.71686464828818 |
| 20 | 7.96555082841106 |
| 21 | 7.96743371481684 |
| 22 | 8.10123447383174 |
| 23 | 8.11356888181766 |
| 24 | 8.2048765987064 |
| 25 | 8.29095893126965 |
| 26 | 8.49411561023278 |
| 27 | 8.75271386485357 |
| 28 | 8.78919791562347 |
| 29 | 8.85607136375944 |
| 30 | 8.88988188897918 |
| 31 | 8.92356431029665 |
| 32 | 8.95153618101385 |
| 33 | 8.97050723203544 |
| 34 | 9.06587006304414 |
| 35 | 9.07634287585039 |
| 36 | 9.25148636706556 |
| 37 | 9.31718841711383 |
| 38 | 9.66436754267965 |
| 39 | 9.86052736926377 |
| 40 | 9.88331928048467 |
| 41 | 9.88989383158384 |
| 42 | 9.95288902781498 |
| 43 | 9.99549898704412 |
| 44 | 9.99699954986495 |
| 45 | 10.0044989879554 |
| 46 | 10.0309520983803 |
| 47 | 10.1024749442896 |
| 48 | 10.3614670775909 |
| 49 | 10.4947605975553 |
| 50 | 10.7405772656780 |
| 51 | 10.8282039138539 |
| 52 | 11.1319360400606 |
| 53 | 11.6481758228488 |
| 54 | 11.6541837981044 |
| 55 | 11.7766718558343 |
| 56 | 11.9887447216129 |
| 57 | 12.0660681251185 |
| 58 | 12.1260051129793 |
| 59 | 12.3211200789539 |
| 60 | 12.3624431242372 |
| 61 | 12.3899152539475 |
| 62 | 13.0479883506999 |
| 63 | 13.4925905592662 |
| 64 | 13.5310753452931 |
| 65 | 13.5535973084639 |
| 66 | 13.9319776054945 |
| 67 | 14.0960987510729 |
| 68 | 15.2849599279815 |
| 69 | 15.3518728499164 |
| 70 | 15.6259399717265 |
| 71 | 16.867127793433 |
| 72 | 17.3594354746921 |
| 73 | 17.4149361181717 |
| 74 | 17.8555313558572 |
| 75 | 20.6859855941166 |
| 76 | 21.6857095802743 |
| 77 | 23.835267986746 |
| 78 | 23.9941659575823 |
| 79 | 28.1700195243099 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/dwqo30as4dm0spa1194169776/15s5h1194169866.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/04/dwqo30as4dm0spa1194169776/15s5h1194169866.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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