Hierarchical Clustering
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 4 seconds |
| R Server | 'Herman Ole Andreas Wold' @ 193.190.124.10:1001 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.14455231422596 |
| 2 | 1.17898261225515 |
| 3 | 1.43273304803851 |
| 4 | 1.56843871413581 |
| 5 | 1.73781471969828 |
| 6 | 2.03469899493758 |
| 7 | 2.17715410570773 |
| 8 | 2.29999999999999 |
| 9 | 2.86705423736629 |
| 10 | 3.11929479209644 |
| 11 | 3.17017349682947 |
| 12 | 3.19687347262916 |
| 13 | 3.33016516106934 |
| 14 | 3.47131099154195 |
| 15 | 3.61109401705355 |
| 16 | 3.66196668472012 |
| 17 | 3.70135110466435 |
| 18 | 3.81968585095685 |
| 19 | 3.89615194775563 |
| 20 | 3.92300904918661 |
| 21 | 3.96179319205448 |
| 22 | 3.97764365280496 |
| 23 | 4.07553677446297 |
| 24 | 4.24852915724963 |
| 25 | 4.25793377120876 |
| 26 | 4.33932824010154 |
| 27 | 4.50111097397076 |
| 28 | 4.59782557302907 |
| 29 | 4.76215199483011 |
| 30 | 4.8559242168716 |
| 31 | 4.90713765855412 |
| 32 | 4.95681349255749 |
| 33 | 4.95883050728698 |
| 34 | 4.99899989998 |
| 35 | 5.02493781056044 |
| 36 | 5.0653098891198 |
| 37 | 5.07346035758632 |
| 38 | 5.18941229813165 |
| 39 | 5.49577088533329 |
| 40 | 5.59016994374948 |
| 41 | 5.64712316139819 |
| 42 | 5.65773806392625 |
| 43 | 5.7835974963685 |
| 44 | 5.85832740635072 |
| 45 | 5.89067059000925 |
| 46 | 5.90004417237779 |
| 47 | 6.01247840984681 |
| 48 | 6.04400529450464 |
| 49 | 6.08938875708563 |
| 50 | 6.23546122291543 |
| 51 | 6.4899922958352 |
| 52 | 6.72160695072243 |
| 53 | 7.13372273080472 |
| 54 | 7.20840373495952 |
| 55 | 7.21905820820651 |
| 56 | 7.25003538977605 |
| 57 | 7.3068461048526 |
| 58 | 7.34166193719106 |
| 59 | 7.35934779718964 |
| 60 | 7.60750765685159 |
| 61 | 7.82879301041994 |
| 62 | 7.94303890716054 |
| 63 | 8.17190308312573 |
| 64 | 8.28378282272124 |
| 65 | 8.3096329642169 |
| 66 | 8.46167832052247 |
| 67 | 8.49176071259666 |
| 68 | 8.56854713472477 |
| 69 | 8.76811608167752 |
| 70 | 8.94027231722047 |
| 71 | 8.95907003691933 |
| 72 | 9.01435076844947 |
| 73 | 9.38172911719515 |
| 74 | 9.60993482256816 |
| 75 | 9.66912552522145 |
| 76 | 9.95914668057293 |
| 77 | 10.1390334845092 |
| 78 | 10.4647687046463 |
| 79 | 10.8966634450131 |
| 80 | 11.0727053555971 |
| 81 | 11.0915988814809 |
| 82 | 11.5814930954821 |
| 83 | 11.9092326084752 |
| 84 | 12.2212286965729 |
| 85 | 12.4736454595802 |
| 86 | 12.6404521746929 |
| 87 | 12.6621043219326 |
| 88 | 12.9626341028559 |
| 89 | 13.1840651351 |
| 90 | 13.9444154947607 |
| 91 | 14.4740586190956 |
| 92 | 14.7058405992207 |
| 93 | 14.7779287550726 |
| 94 | 14.9166090336643 |
| 95 | 14.9618410211285 |
| 96 | 15.0318254547874 |
| 97 | 15.8249731895689 |
| 98 | 16.4890594429390 |
| 99 | 17.024118876666 |
| 100 | 17.9121705667380 |
| 101 | 17.9835839845693 |
| 102 | 18.9031495568518 |
| 103 | 19.8604681058242 |
| 104 | 20.811925822747 |
| 105 | 21.8970317623188 |
| 106 | 23.2177616452124 |
| 107 | 23.8209991394148 |
| 108 | 24.8676523423354 |
| 109 | 27.8402089145275 |
| 110 | 28.5278851132905 |
| 111 | 28.5964907857572 |
| 112 | 30.8721712782153 |
| 113 | 31.1026270264149 |
| 114 | 34.3774955511376 |
| 115 | 37.3135189299651 |
| 116 | 40.0516505373312 |
| 117 | 40.383561551453 |
| 118 | 45.7672769399603 |
| 119 | 45.8922304375039 |
| 120 | 48.9701837471502 |
| 121 | 52.5342637634169 |
| 122 | 53.934612395509 |
| 123 | 54.4323366256357 |
| 124 | 54.6189226694044 |
| 125 | 61.3221422326661 |
| 126 | 66.3874579852863 |
| 127 | 77.2738543924884 |
| 128 | 86.9961096883478 |
| 129 | 109.526485681624 |
| 130 | 113.42315509366 |
| 131 | 128.123558863818 |
| 132 | 136.777663930629 |
| 133 | 173.816295962689 |
| 134 | 179.665006656928 |
| 135 | 310.314633714461 |
| 136 | 389.496792834579 |
| 137 | 571.56692304167 |
| 138 | 713.173595183273 |
| 139 | 1081.20638882844 |
| 140 | 2628.14586615085 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/03/r5smlq7hdegnclk1194092814/1e7zq1194092872.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/03/r5smlq7hdegnclk1194092814/1e7zq1194092872.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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This work is licensed under a
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Software written by Ed van Stee & Patrick Wessa
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